PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre06.g275550.t1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family Nin-like
Protein Properties Length: 1108aa    MW: 109007 Da    PI: 5.32
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre06.g275550.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK52.31.1e-16942987449
              RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 
                         ++s +dl++y++l+ ++AAk Lg+ l+  K+ CR++G++RWP Rk+
  Cre06.g275550.t1.1 942 KVSRDDLKQYYHLQAREAAKLLGMALSCFKKVCRRLGVPRWPARKL 987
                         67899****************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.7229191010IPR003035RWP-RK domain
PfamPF020426.5E-16943987IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 1108 aa     Download sequence    Send to blast
MACERPDIKQ LGVAEPGVLG VASPVQTRSV APSALPTGAG TSPGGAPTGA VPGSHLSSTT  60
SSEPDEMGYH CSSSPSPPQS SEPGQAANAP GKPGPASSPV CPPAANVASQ TEPLPTLPSQ  120
PQRPIPDQIS PEAAASLPAA AAASAAATAA ATAAATAAVA ASGNPETAPK QLSAGSGAVG  180
PTPAPHAFAS TAMDGARTGD ASGSGLRPPR EGPKAAESHM GRQSSQSLPA APQPTGGLLA  240
TIELMRQQQV AAAAAVAAAA GATVAKGSPI EGGKNMMDAA DADVGHGFGE VETCQLTKKE  300
LAIGLHLVLG EGMSEFVSMG VQPVLFAEYL EQIKTACWAM WGGPGLPPAN MVRQRMHVAL  360
TSPLAARLLE LDVNNALAAK GVRVGPGGGL MHLSPLPLQV PGLLPMQVPG LGGVDAAVML  420
GSPSGSHGVA AAMAAAAAAA AAAGRSWPGA PPGVVGMLPP MQHFGSLAAA QAGLAQMGAG  480
MIDPAVLAAA AAAQQQQHGA AELEQILLRQ QQLQQQKQES HDEAQQQQHL QQQKQQAVAA  540
HDEPAPKRKA SGGRGARGRG GSGGSGSGSA AAASATAAAD AVMVQEAVGD VTLERDADAA  600
PPGRWPSRGS GRQQGDAHAR SSAAGAEVAG PAGKSGAVAG AAAASLSRLE ALMAATEHVA  660
GLGGDEEGAQ EASVGGAAAH GEAAAAREAA PVPMEEGAGA GADEPLECEE DIFNAAAAAA  720
AAAAGAATAT VGAKRRRTAG GGSADLGPAG LLALDRTALL LQAAGAAADA DPELRAAGLG  780
SVGGAAGAAA GTGVMGRGDL DGGDSDDDGG VGGEDGEDDG GDPWLGPPVA RSSKARRALA  840
GRGASGISTG GAGGAAAAHL LLGGALGALV GVGRDGRVLP DGAYTAAAAL RRGGGGGDDD  900
MAMGDGDEEG DYMMGGGGSG GMSGGRGRSP AVGGGRGWPS GKVSRDDLKQ YYHLQAREAA  960
KLLGMALSCF KKVCRRLGVP RWPARKLVCL HRMATTLRSM TNMSPQEKQE AMRRVKQNID  1020
DILEDPECAV YEDIRKLLHG QYKMRTNQRQ VRGKSGRSSG AARRRNSGGV GGSVSGDGEE  1080
WDEEGDDDDM MGVMGAAGVD MGAAGME*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP609428
Representative plantOGRP1033348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.15e-12RWP-RK domain-containing protein